species:   Fugra
pid:       PID0961
parent:    FgmilR-7dps-20
paralog:   
locus:     NC_026474.1:562788-562919
matures:   ['UAUGCUACUGCUGAGCCUGACCU', 'CUCGCUCAAGGUACGUGAC']
srr:       SRR6516243
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram NC_026474.1:562788-562919

0 out of bounds
3 alignments
3 proper strand
3 stranded perfect matches

       **********************                                                                      **************************       
GGCUUUGAGCUCGCUCAAGGUACGUGACUUACAUGUGAUACUCAAACACAAGCUCAUACCAUACAGCCCCUCACCCGUGCCGCUUUUGUGGGAGCUCGCGGUUAUGCUACUGCUGAGCCUGACCUCAAGGCC
(((((((((.(((((((.(((((((((((....((((.........))))(((((...(((((.(((..(........)..)))..))))))))))...))))))).))))..)))))..)).)))))))))
------------------------------------------------------------------------------------------------------UAUGCUACUGCUGAGCCUGACCU------- l=23 a=0 c
---------CUCGCUCAAGGUACGUGAC-------------------------------------------------------------------------------------------------------- l=19 a=0 c*
--------------------------------------------------------------------------------CGCUUUUGUGGGAGCUCGCGGU------------------------------ l=22 a=2 ma
---------CUCGCUCAAGGUACGUGAC-------------------------------------------------------------------------------------------------------- l=19 a=0 ma*

---------------------------------------------------------------------------------------------------------GCUACUGCUGAGCCUGACCUCAAG--- l=24 a=1 
--------------------------------------------------------------------------------CGCUUUUGUGGGAGCUCGCGGU------------------------------ l=22 a=2 (ma)

mb-00011
ax-1011011
ku-01
ss-111111111010
fn-011
